Note: This is a part of my May 2 - 8, 2015 Samar-Leyte-Biliran-Mactan-Cebu Trip which includes: Capul Island, San Antonio Island, Dalutan Island, Sambawan Island, The Queen of the Most Holy Rosary Shrine, Ciriaco Hotel, Saints Peter and Paul Cathedral, Other Calbayog tours, San Juanico Bridge, MacArthur Landing Memorial National Park, Limasawa Island, dakdak beach resort
As a suggestion, if you organized a trip which covers like the one above, you can also include the following: Bangon Water Falls, Tarangban Waterfalls, and Tabokno Water Falls
Travelling from Limasawa Island to Manila is such a long trip where I started a boat ride from Dakdak Beach Resort of Limasawa Island to Padre Burgos Seaport of Southern Leyte mainland for an hour at P100 per head. From Padre Burgos to Maasin City of Southern Leyte is a jeepney travel for 75 minutes at P50 per head.
From Maasin City, there is a shuttle bus for P35 to Hilongos Port for a land travel of an hour. A ship takes you from Hilongos, Southern Leyte to Cebu City for four hours. The ship arrives at Cebu Port and for a walking distance take another short ferry ride from that Pier going to Mactan Island. Two jeepney rides or a taxi going to Cebu-Mactan International Airport for the flight to Manila for 1 hour and 10 minutes.